SNP Profiles of TSH 516   View Data

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 Key

 1234567891011121314
_Input profile
CCACGGACAAAGAGACATAGAGAGAGAC
1._RUQ_1018
______AG_______
2._TSH_516
_____CTAG_AT_____
3._GC-08-208-6-04
CCACGGACTTCTAGGTATCTAGCTCTGT
4._GC-08-208-6-04
CCACGGACTTCTAGGTATCTAGCTCTGT
5._TSH_516
_____CTAG_AT_____
6._GC-08-209-6-05
CCACGGACTTCTAGGTATCTAGCTCTGT
7._GC-08-209-6-05
CCACGGACTTCTAGGTATCTAGCTCTGT
8._GC-08-209-6-05
CCACGGACTTCTAGGTATCTAGCTCTGT
9._GC-08-209-6-05
CCACGGACTTCTAGGTATCTAGCTCTGT
10._GC-08-209-6-05
CCACGGACTTCTAGGTATCTAGCTCTGT
11._GC-08-209-6-05
CCACGGACTTCTAGGTATCTAGCTCTGT
12._GC-08-209-6-05
CCACGGACTTCTAGGTATCTAGCTCTGT
13._GC-08-208-6-04
CCACGGACTTCTAGGTATCTAGCTCTGT
14._GC-08-208-6-04
CCACGGACTTCTAGGTATCTAGCTCTGT
15._GC-08-208-6-04
CCACGGACTTCTAGGTATCTAGCTCTGT
16._GC-08-208-6-04
CCACGGACTTCTAGGTATCTAGCTCTGT
17._GC-08-208-6-04
CCACGGACTTCTAGGTATCTAGCTCTGT
18._TSH_516
_____CTAG_AT_____
19._TSH_516
_____CTAG_AT_____
20._TSH_516
_____CTAG_AT_____
21._TSH_516
_____CTAG_AT_____
22._TSH_516
_____CTAG_AT_____
23._TSH_516
_____CTAG_AT_____
24._TSH_516
_____CTAG_AT_____
25._TSH_516
_____CTAG_AT_____
26._TSH_516
_____CTAG_AT_____
27._TSH_516
_____CTAG_AT_____
28._TSH_516
_____CTAG_AT_____
29._TSH_516
_____CTAG_AT_____
30._RUQ_1018
_____CTAG_AT_____
31._RUQ_1018
_____CT_GT__AG___
32._TSH_516
_____CTAG_AA_____
33._GC-08-209-6-05
CCACAGACTTCTAGGGAACTAGCTCTGT
 1516171819202122232425262728
_Input profile
AGACAGAGACAGAGAGACAGCGAGCCAG
1._RUQ_1018
_GT______AC_CG___
2._TSH_516
_GTCT_AC_CT_ACCTCGAGGG_
3._GC-08-208-6-04
CTGTCTTTACAGCTCTACCTCGAGGGCT
4._GC-08-208-6-04
CTGTCTTTACAGCTCTACCTCGAGGGCT
5._TSH_516
_GTCT_AC_CT_ACCTCGAGGGCT
6._GC-08-209-6-05
CTGTCTTTACAGCTCTACCTCGAGGGCT
7._GC-08-209-6-05
CTGTCTTTACAGCTCTACCTCGAGGGCT
8._GC-08-209-6-05
CTGTCTTTACAGCTCTACCTCGAGGGCT
9._GC-08-209-6-05
CTGTCTTTACAGCTCTACCTCGAGGGCT
10._GC-08-209-6-05
CTGTCTTTACAGCTCTACCTCGAGGGCT
11._GC-08-209-6-05
CTGTCTTTACAGCTCTACCTCGAGGGCT
12._GC-08-209-6-05
CTGTCTTTACAGCTCTACCTCGAGGGCT
13._GC-08-208-6-04
CTGTCTTTACAGCTCTACCTCGAGGGCT
14._GC-08-208-6-04
CTGTCTTTACAGCTCTACCTCGAGGGCT
15._GC-08-208-6-04
CTGTCTTTACAGCTCTACCTCGAGGGCT
16._GC-08-208-6-04
CTGTCTTTACAGCTCTACCTCGAGGGCT
17._GC-08-208-6-04
CTGTCTTTACAGCTCTACCTCGAGGG_
18._TSH_516
_GTCT_AC_CT_ACCTCGAGGGCT
19._TSH_516
_GTCT_AC_CT_ACCTCGAGGGCT
20._TSH_516
_GTCT_AC_CT_ACCTCGAGGGCT
21._TSH_516
_GTCT_AC_CT_ACCTCGAGGGCT
22._TSH_516
_GTCT_AC_CT_ACCTCGAGGGCT
23._TSH_516
_GTCT_AC_CT_ACCTCGAGGGCT
24._TSH_516
_GTCT_AC_CT_ACCTCGAGGGCT
25._TSH_516
_GTCT_AC_CT_ACCTCGAGGGCT
26._TSH_516
_GTCT_AC_CT_ACCTCGAGGGCT
27._TSH_516
_GTCT_AC_CT_ACCTCGAGGGCT
28._TSH_516
_GTCT_AC_CT_ACCTCGAGGGCT
29._TSH_516
_GTCT_AC_CT_ACCTCGAGGGCT
30._RUQ_1018
_GTCT_AC_CT_ACCTCGAGGGCT
31._RUQ_1018
_GT_CT___CTACCTCGAGGGCT
32._TSH_516
_GTCC_AC_CT_ACCCCGAGGT_
33._GC-08-209-6-05
CTGTCC_ACAGCTCTACCCCGAGGT_
 2930313233343536373839404142
_Input profile
AGATGGACCGAAAGAGCGACATATAAAG
1._RUQ_1018
_____AA______AA_
2._TSH_516
CT__ACCGAA_CTCG__AT__
3._GC-08-208-6-04
CTATGGACCGAAAGCTCGGTATATAAAG
4._GC-08-208-6-04
CTATGGACCGAAAGCTCGGTATATAAAG
5._TSH_516
CT__ACCGAA_CTCG__AT__
6._GC-08-209-6-05
CTATGGACCGAAAGCTCGGTATATAAAG
7._GC-08-209-6-05
CTATGGACCGAAAGCTCGGTATATAAAG
8._GC-08-209-6-05
CTATGGACCGAAAGCTCGGTATATAAAG
9._GC-08-209-6-05
CTATGGACCGAAAGCTCGGTATATAAAG
10._GC-08-209-6-05
CTATGGACCGAAAGCTCGGTATATAAAG
11._GC-08-209-6-05
CTATGGACCGAAAGCTCGGTATATAAAG
12._GC-08-209-6-05
CTATGGACCGAAAGCTCGGTATATAAAG
13._GC-08-208-6-04
CTATGGACCGAAAGCTCGGTATATAAAG
14._GC-08-208-6-04
CTATGGACCGAAAGCTCGGTATATAAAG
15._GC-08-208-6-04
CTATGGACCGAAAGCTCGGTATATAAAG
16._GC-08-208-6-04
CTATGGACCGAAAGCTCGGTATATAAAG
17._GC-08-208-6-04
CTATGGACCGAAAGCTCGGTATATAGAG
18._TSH_516
CT__ACCGAA_CTCG__AT__
19._TSH_516
CT__ACCGAA_CTCG__AT__
20._TSH_516
CT__ACCGAA_CTCG__AT__
21._TSH_516
CT__ACCGAA_CTCG__AT__
22._TSH_516
CT__ACCGAA_CTCG__AT__
23._TSH_516
CT__ACCGAA_CTCG__AT__
24._TSH_516
CT__ACCGAA_CTCG__AT__
25._TSH_516
CT__ACCGAA_CTCG__AT__
26._TSH_516
CT__ACCGAA_CTCG__AT__
27._TSH_516
CT__ACCGAA_CTCG__AT__
28._TSH_516
CT__ACCGAA_CTCG__AT__
29._TSH_516
CT__ACCGAA_CTCG__AT__
30._RUQ_1018
CT__ACCGAA_CTCG__AT__
31._RUQ_1018
__GGACCGAA_CT____AAAG
32._TSH_516
CT__ACCCAG_CCCG__AT__
33._GC-08-209-6-05
CTATGGACCCAGAGCCCGGTATATAGGG
 4344454647484950515253545556
_Input profile
AAGGAAAGAGAACGAGACACAGACAGCG
1._RUQ_1018
_________AA___CG
2._TSH_516
AA___AG____AC_GT_CG
3._GC-08-208-6-04
AACCAAAGAGAACG_ACACAGGTAGCG
4._GC-08-208-6-04
AACCAAAGAGAACG_ACACAGGTAGCG
5._TSH_516
AA___AG____AC_GT_CG
6._GC-08-209-6-05
AACCAAAGAGAACG_ACACAGGTAGCG
7._GC-08-209-6-05
AACCAAAGAGAACG_ACACAGGTAGCG
8._GC-08-209-6-05
AACCAAAGAGAACG_ACACAGGTAGCG
9._GC-08-209-6-05
AACCAAAGAGAACG_ACACAGGTAGCG
10._GC-08-209-6-05
AACCAAAGAGAACG_ACACAGGTAGCG
11._GC-08-209-6-05
AACCAAAGAGAACG_ACACAGGTAGCG
12._GC-08-209-6-05
AACCAAAGAGAACG_ACACAGGTAGCG
13._GC-08-208-6-04
AACCAAAGAGAACG_ACACAGGTAGCG
14._GC-08-208-6-04
AACCAAAGAGAACG_ACACAGGTAGCG
15._GC-08-208-6-04
AACCAAAGAGAACG_ACACAGGTAGCG
16._GC-08-208-6-04
AACCAAAGAGAACG_ACACAGGTAGCG
17._GC-08-208-6-04
AA_AAAGAG_CG_ACACAGGTAGCG
18._TSH_516
AA___AG____AC_GT_CG
19._TSH_516
AA___AG____AC_GT_CG
20._TSH_516
AA___AG____AC_GT_CG
21._TSH_516
AA___AG____AC_GT_CG
22._TSH_516
AA___AG____AC_GT_CG
23._TSH_516
AA___AG____AC_GT_CG
24._TSH_516
AA___AG____AC_GT_CG
25._TSH_516
AA___AG____AC_GT_CG
26._TSH_516
AA___AG____AC_GT_CG
27._TSH_516
AA___AG____AC_GT_CG
28._TSH_516
AA___AG____AC_GT_CG
29._TSH_516
AA___AG____AC_GT_CG
30._RUQ_1018
AA___AG____AC_GT_CG
31._RUQ_1018
AA_____CC__AC_GT_GG
32._TSH_516
AA___AA____AA_GG_CC
33._GC-08-209-6-05
AACTAGGGAAAACG_ACAAAAGGAGCC
 5758596061626364656667686970
_Input profile
ACGGGGAAAGAGACAGAAACACAAACCG
1._RUQ_1018
AC_CC___GTAG____ACCT
2._TSH_516
___TT__GT_______
3._GC-08-208-6-04
ACCCCC_AGAGGTAGTTGTGTTTACCG
4._GC-08-208-6-04
ACCCCCTTAGAGGTAGTTGT_TTACCG
5._TSH_516
AC_____GT_______
6._GC-08-209-6-05
ACCCCCTTAGAGGTAGTTGTGTTTACCG
7._GC-08-209-6-05
ACCCCCTTAGAGGTAGTTGTGTTTACCG
8._GC-08-209-6-05
ACCCCCTTAGAGGTAGTTGTGTTTACCG
9._GC-08-209-6-05
ACCCCCTTAGAGGTAGTTGTGTTTACCG
10._GC-08-209-6-05
ACCCCCTTAGAGGTAGTTGTGTTTACCG
11._GC-08-209-6-05
ACCCCCTTAGAGGTAGTTGTGTTTACCG
12._GC-08-209-6-05
ACCCCCTTAGAGGTAGTTGTGTTTACCG
13._GC-08-208-6-04
ACCCCCTTAGAGGTAGTTGTGTTTACCG
14._GC-08-208-6-04
ACCCCCTTAGAGGTAGTTGTGTTTACCG
15._GC-08-208-6-04
ACCCCCTTAGAGGTAGTTGTGTTTACCG
16._GC-08-208-6-04
ACCCCCTTAGAGGTAGTTGTGTTTACCG
17._GC-08-208-6-04
_CCCCTTAG_GT_TTGTGTTTACCG
18._TSH_516
AC__TT__GT_______
19._TSH_516
AC__TT__GT_______
20._TSH_516
AC__TT__GT_______
21._TSH_516
AC__TT__GT_______
22._TSH_516
AC__TT__GT_______
23._TSH_516
AC__TT__GT_______
24._TSH_516
AC__TT__GT_______
25._TSH_516
AC__TT__GT_______
26._TSH_516
AC__TT__GT_______
27._TSH_516
AC__TT__GT_______
28._TSH_516
AC__TT__GT_______
29._TSH_516
AC__TT__GT_______
30._RUQ_1018
AC__TT__GT_______
31._RUQ_1018
AC_CCTT__GTAGTT__TTAC_
32._TSH_516
AC__TT__GT_______
33._GC-08-209-6-05
ACCCCCTTAAAAGTAATTTTGTTTACCG
 717273747576777879808182  
_Input profile
AGCGAGCGAGACAGCGAGATAGAGX_XX_X
1._RUQ_1018
_CG__AG______AGX_XX_X
2._TSH_516
_CG____CTCG_ATCTAGX_XX_X
3._GC-08-208-6-04
AACGCTCGAGACCTCGCTATCTAGX_XX_X
4._GC-08-208-6-04
AACGCTCGAGACCTCGCTATCTAGX_XX_X
5._TSH_516
_CGCT___CTCG_ATCTAGX_XX_X
6._GC-08-209-6-05
AACGCTCGAGACCTCGCTATCTAGX_XX_X
7._GC-08-209-6-05
AACGCTCGAGACCTCGCTATCTAGX_XX_X
8._GC-08-209-6-05
AACGCTCGAGACCTCGCTATCTAGX_XX_X
9._GC-08-209-6-05
AACGCTCGAGACCTCGCTATCTAGX_XX_X
10._GC-08-209-6-05
AACGCTCGAGACCTCGCTATCTAGX_XX_X
11._GC-08-209-6-05
AACGCTCGAGACCTCGCTATCTAGX_XX_X
12._GC-08-209-6-05
AACGCTCGAGACCTCGCTATCTAGX_XX_X
13._GC-08-208-6-04
AACGCTCGAGACCTCGCTATCTAGX_XX_X
14._GC-08-208-6-04
AACGCTCGAGACCTCGCTATCTAGX_XX_X
15._GC-08-208-6-04
AACGCTCGAGACCTCGCTATCTAGX_XX_X
16._GC-08-208-6-04
AACGCTCGAGACCTCGCTATCTAGX_XX_X
17._GC-08-208-6-04
AACG_CGAGACCTCGCTATCTAGX_XX_X
18._TSH_516
_CGCT___CTCG_ATCTAGX_XX_X
19._TSH_516
_CGCT___CTCG_ATCTAGX_XX_X
20._TSH_516
_CGCT___CTCG_ATCTAGX_XX_X
21._TSH_516
_CGCT___CTCG_ATCTAGX_XX_X
22._TSH_516
_CGCT___CTCG_ATCTAGX_XX_X
23._TSH_516
_CGCT___CTCG_ATCTAGX_XX_X
24._TSH_516
_CGCT___CTCG_ATCTAGX_XX_X
25._TSH_516
_CGCT___CTCG_ATCTAGX_XX_X
26._TSH_516
_CGCT___CTCG_ATCTAGX_XX_X
27._TSH_516
_CGCT___CTCG_ATCTAGX_XX_X
28._TSH_516
_CGCT___CTCG_ATCTAGX_XX_X
29._TSH_516
_CGCT___CTCG_ATCTAGX_XX_X
30._RUQ_1018
_CGCT___CTCG_ATCTAGX_XX_X
31._RUQ_1018
_CG-_-AC_____AGX_XX_X
32._TSH_516
_CGCT___CTCG_ATCTAGX_XX_X
33._GC-08-209-6-05
AACGCTCGAGCCCTCGCCATCTAGX_XX_X

Input profile: TSH_516 RUQ_1018

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._TSH_516 RUQ_1018

73.5 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._TSH_516

59.4 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 7
 Dapeng Zhang, 2016

3._TSH_516 GC-08-208-6-04

59.4 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

4._TSH_516 GC-08-208-6-04

59.4 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._TSH_516

58.8 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 4 > FP
 Dapeng Zhang, 2016

6._TSH_516 GC-08-209-6-05

58.6 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._TSH_516 GC-08-209-6-05

58.6 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._TSH_516 GC-08-209-6-05

58.6 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._TSH_516 GC-08-209-6-05

58.6 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

10._TSH_516 GC-08-209-6-05

58.6 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._TSH_516 GC-08-209-6-05

58.6 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._TSH_516 GC-08-209-6-05

58.6 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

13._TSH_516 GC-08-208-6-04

58.6 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._TSH_516 GC-08-208-6-04

58.6 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

15._TSH_516 GC-08-208-6-04

58.6 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP1
 Mars, 2018

16._TSH_516 GC-08-208-6-04

58.6 %
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._TSH_516 GC-08-208-6-04

58.1 %
74 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._TSH_516

57.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 10
 Dapeng Zhang, 2016

19._TSH_516

57.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 9
 Dapeng Zhang, 2016

20._TSH_516

57.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 7
 Dapeng Zhang, 2016

21._TSH_516

57.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 6
 Dapeng Zhang, 2016

22._TSH_516

57.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 3
 Dapeng Zhang, 2016

23._TSH_516

57.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 2
 Dapeng Zhang, 2016

24._TSH_516

57.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 1
 Dapeng Zhang, 2016

25._TSH_516

57.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 3 > FP
 Dapeng Zhang, 2016

26._TSH_516

57.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 9
 Dapeng Zhang, 2016

27._TSH_516

57.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 8
 Dapeng Zhang, 2016

28._TSH_516

57.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 2
 Dapeng Zhang, 2016

29._TSH_516

57.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

30._TSH_516 RUQ_1018

57.1 %
35 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

31._TSH_516 RUQ_1018

54.3 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

32._TSH_516

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 5
 Dapeng Zhang, 2016

33._TSH_516 GC-08-209-6-05

50 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998